Local Quantification turns the slide you are already looking at into numbers. Segmentation and measurement run on your own computer, so unpublished and patient-derived images never leave the machine, and the result arrives in the same window as the image.
Segmentation and measurement run locally. Only model weights are downloaded, and SlideScope verifies their SHA-256 digest before loading them. Nothing about the image is uploaded, which is the difference that matters for unpublished data, patient-derived material, and institutional review.
Run verified InstanSeg deep-learning weights for nuclei and cells, or an explicit classical threshold with Otsu auto-selection, polarity detection, smoothing, and area bounds. You always know which engine produced a number, and the methods summary records it.
Every run is described by a saved recipe: object type, engine, channel, thresholds, area limits, marker channels. Reload the recipe, rerun the folder, and get the same analysis. The exported methods summary is written to be pasted into a manuscript.
Quantify the whole image or just the region you selected. Working on a region keeps a gigapixel slide fast and keeps the analysis on the tissue you actually care about.
Nuclei, cells, or particles. InstanSeg for nuclei and cells, classical thresholding for anything else or when you need a fully explicit rule.
Results land as an overlay on the image. Scroll the object table, click through outliers, and exclude anything the segmentation misread. Nothing is final until you say so.
Export the bundle, or save the settings as a recipe and run the same analysis over an entire folder in one pass with a combined batch summary.
No. Segmentation and measurement run in the SlideScope process on your own machine. The only network request is a one-time download of model weights, and SlideScope verifies the SHA-256 digest of both the archive and the model before it loads any code.
Use InstanSeg for nuclei and cells in brightfield or fluorescence: it handles touching objects far better than a threshold. Use the classical engine for particles, for unusual stains, or whenever you need a rule you can state exactly in a methods section.
Treat them as research output that needs your quality control. SlideScope shows the segmentation as an editable overlay precisely so you can check it, and it exports a methods summary describing exactly how each number was produced. Results are not validated for diagnosis or clinical decision-making.
Research use only. Results require visual quality control and are not validated for diagnosis or clinical decision-making.
The 14-day trial is full access, including Local Quantification and folder batch runs. Try it on the images your laboratory is actually working on.